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Melting Temperature (Tm) Testing for Nucleic Acid Drugs

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CD Formulation is committed to providing high-precision Tm analysis services for nucleic acid drugs to customers worldwide. Our professional team utilizes state-of-the-art technology and equipment to ensure accurate and reliable Tm measurement results.

Why Conduct Melting Temperature (Tm) Testing for Nucleic Acid Drugs?

Determining the melting temperature (Tm) of nucleic acids is crucial for assessing the denaturation point of their double-stranded configuration, which directly impacts the molecular stability and functionality of these biopolymers. Elevated Tm values typically reflect enhanced intermolecular forces, including hydrogen bonding and stacking interactions, indicating greater binding energy between nucleic acid strands, thus preserving structural integrity. In drug design, optimizing the Tm of nucleic acid molecules helps enhance their ability to maintain functional structures under various conditions, such as complex physiological environments and temperature fluctuations in vivo. Additionally, Tm analysis can provide information to predict the specific and non-specific binding behaviors of nucleic acid drugs, thus guiding drug modification strategies and storage conditions.

Explore our Tm Analysis Services for Nucleic Acid Drugs

Single-Strand Nucleic Acid Tm Evaluation

UV spectrometry is essential for single-strand Tm evaluation. By examining UV absorption across varying temps, the shift from double to single strands is observed as temps rise. As heating occurs, double strands unwind, increasing single strand UV absorption - this helps identify the melting point. The method is fast, non-invasive, and label-free. Its low sample requirement suits initial structural stability checks.

Double-Strand Nucleic Acid Tm Evaluation

For double strands, UV spectrometry combined with DSC offers a thorough analysis. While UV checks changes in specific absorption during strand separation, DSC analyzes heat flow to charactize Tm, giving detailed thermodynamic data like enthalpy and entropy changes for precise stability evaluation.

Considerations for Nucleic Acid Drug Tm Analysis

  • Ensure that nucleic acid samples are free from impurities, especially proteins and other interfering substances, as they may affect the measurement results.
  • The pH value of the buffer solution used in the test should be appropriate, generally around pH 7.0, to ensure the nucleic acid is in a neutral environment.
  • Salt concentration significantly affects melting temperature. Thus, it is crucial to strictly control salt concentration and use consistent conditions throughout the experiment.
  • The heating rate should be uniform, typically selecting a heating rate of 0.5-1°C per minute to achieve accurate Tm values.

Workflow of Nucleic Acid Drug Tm Analysis

Fig.1 Flowchart illustrating the melting temperature of nucleic acid therapeutics.Fig.1 Flow chart of melting temperature for nucleic acid drugs. (CD Formulation)

  • Sample Preparation

Prior to melting temperature analysis, precise preparation of nucleic acid drug samples is necessary, ensuring that their concentration and purity meet experimental requirements for reliable analysis results.

  • Experimental Setup

Select suitable experimental equipment and conditions based on the characteristics of the nucleic acid drug, such as temperature gradient and buffer environment, to ensure accurate monitoring of the melting process.

  • Data Collection

Monitor optical characteristics changes of nucleic acid drugs under increasing temperature conditions and collect absorbance or fluorescence change data in real-time for subsequent analysis.

  • Data Analysis

Use professional software to process the collected data, analyze the melting curve of nucleic acid drugs, determining their Tm and other thermodynamic parameters.

Our Technology Platforms

  • UV-Vis Platform - By detecting changes in UV absorption of nucleic acids at different temperatures, accurately determine the melting temperature of nucleic acid drugs.
  • DSC Platform - Measure the heat flow difference between the sample and reference caused by temperature changes, accurately determining the melting characteristics of nucleic acids.
  • NMR Platform - Nuclear magnetic resonance can provide information on structural changes of nucleic acid drugs under different temperature conditions, inferring the melting temperature.

Our Advantages of Nucleic Acid Drug Tm Analysis

  • Our Tm analysis services employ advanced technology and equipment to ensure high precision measurement results, supporting the structural and functional research of nucleic acid drugs.
  • With optimized experimental processes, we deliver results promptly, assisting clients in timely follow-up experiments and decision-making.
  • Combining multiple detection methods, such as UV and DSC, provides a comprehensive evaluation of nucleic acid stability, covering thermodynamic, optical, and other aspects.
  • We offer personalized analysis plans tailored to each project's specific needs, ensuring that our services fully meet the research objectives of our clients.

Publication Data

Technology: Melting temperature analysis of nucleic acids using the UV-Vis platform

Journal: Liquid Crystals: Materials Design and Self-assembly

IF: 2.4

Published: 2012

Results:

In recent years, the understanding of DNA interactions has significantly advanced the creation of DNA-based self-assembling structures, which rely heavily on DNA-DNA interaction characteristics. These constructs often exploit the programmable selectivity and modular strength of DNA interactions. The exploration of DNA materials is swiftly growing in areas like condensed matter physics, nanotechnology, and materials science. The focus is primarily on systems where DNA-mediated interactions drive the formation of 'phases,' or structures that greatly exceed the size of individual building blocks. With the ability to precisely adjust the geometry and strength of DNA-mediated interactions, these systems offer diverse self-assembly possibilities, including amorphous forms, liquid crystals, and crystalline formations across one, two, or three dimensions.

Fig.2 Correlation between DNA melting temperature (Tm) and the length of the duplex (N).Fig.2 Dependence of DNA melting temperature Tm on duplex length N. (Bellini T, et al., 2012)

For more information on our Tm analysis services or other related services, please feel free to contact us. We are dedicated to providing customized solutions for each client, ensuring that your project proceeds smoothly.

References

  1. Bellini T, Cerbino R, Zanchetta G. DNA-based soft phases. Liq Cryst. 2012: 225-279.
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